外电场对2-氟-5-溴吡啶分子结构与电子光谱影响的研究

采用密度泛函B3LYP方法，在6-311++g(3df,3pd)基组水平上优化了不同外电场下2-氟-5-溴吡啶分子的基态稳定构型、电偶极矩和分子的总能量，在此基础上利用杂化CIS方法研究了外电场下2-氟-5-溴吡啶分子的前9个激发态的激发能、波长和振子强度受外电场的影响规律。结果表明：5C-9Br和3C-10F间键长受到X轴向外场影响最大，随着外电场的继续增加，可能最先趋于断裂；在外电场F=-0.005a.u.时总能量达到最大，而偶极矩达到最小；LUMO能级受外场影响较大，HOMO能级受外电场影响较小；激发波长、振子强度也受外电场影响，但随电场变化比较复杂。     

Dynamical structure of peptide molecules: Fourier transform microwave spectroscopy and ab initio calculations of N-methylformamide

Rotational spectra of both trans and cis forms of the N-methylformamide normal as well as deuterated (HCONDCH₃, referred to as N-D) species were observed by Fourier transform microwave spectroscopy in the frequency region from 5 to 118 GHz. Samples were prepared in the form of a beam by a pulsed jet valve maintained at 50 °C and were introduced in a high-vacuum cavity cell, with either Ne or Ar as a carrier gas at a backing pressure of 100 kPa. The observed spectra were analyzed to yield molecular parameters including rotational constants and barrier, V₃, to CH₃ internal-rotation: 53.9 (6) and 301 (4) cm⁻¹ for the trans and cis forms of the normal species, respectively, and 41.9 (6) and 309 (4) cm⁻¹ for the trans and cis forms of the N-D species, respectively. Spectra of four trans isotopologues with ¹³C, ¹⁵N, or ¹⁸O singly-substituted in the internal-rotation A state were observed and analyzed to derive the r_s structure of the trans form. For comparison with the experimental data, ab initio calculations were carried out at MP2/6-31G∗∗ level to derive molecular structure, potential barrier to CH₃ internal rotation, and the energy difference between the cis and trans forms. An extensive coupling was found between the CH₃ internal rotation and N-H out-of-plane bending, suggesting that the potential function for the CH₃ internal-rotation deviates considerably from a simple cos(3α) form. The effects of the V₆ term is briefly discussed.     

Intramolecular interactions of L‐phenylalanine: Valence ionization spectra and orbital momentum distributions of its fragment molecules

Intramolecular interactions between fragments of L ‐phenylalanine, i.e., phenyl and alaninyl, have been investigated using dual space analysis (DSA) quantum mechanically. Valence space photoelectron spectra (PES), orbital energy topology and correlation diagram, as well as orbital momentum distributions (MDs) of L ‐phenylalanine, benzene and L ‐alanine are studied using density functional theory methods. While fully resolved experimental PES of L ‐phenylalanine is not yet available, our simulated PES reproduces major features of the experimental measurement. For benzene, the simulated orbital MDs for 1e_1g and 1a_2u orbitals also agree well with those measured using electron momentum spectra. Our theoretical models are then applied to reveal intramolecular interactions of the species on an orbital base, using DSA. Valence orbitals of L ‐phenylalanine can be essentially deduced into contributions from its fragments such as phenyl and alaninyl as well as their interactions. The fragment orbitals inherit properties of their parent species in energy and shape (ie., MDs). Phenylalanine orbitals show strong bonding in the energy range of 14‐20 eV, rather than outside of this region. This study presents a competent orbital based fragments‐in‐molecules picture in the valence space, which supports the fragment molecular orbital picture and building block principle in valence space. The optimized structures of the molecules are represented using the recently developed interactive 3D‐PDF technique. © 2010 Wiley Periodicals, Inc. J Comput Chem, 2011     

Theoretical study with vibration–rotation and dipole moment calculations of quartet states of the CrCl molecule

The potential energy curves have been investigated for the 10 lowest quartet electronic states in the ^2s+1Λ^± representation below 30,000 cm^?1 of the molecule CrCl via CASSCF and MRCI (singly and doubly excitation with Davidson correction) calculations. The harmonic frequency ω_e, the internuclear distance r_e, the rotational constant B_e, the electronic energy with respect to the ground state T_e, and the permanent dipole moment μ have been calculated. By using the canonical functions approach, the eigenvalues E_v, the rotational constant B_v, and the abscissas of the turning points r_min and r_max have been calculated for the considered electronic states up to the vibrational level v = 19. Seven electronic states have been studied here theoretically for the first time. The comparison of these values to the theoretical results available in the literature shows a good agreement. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Spectral Diffusion of Single Molecules in a Hierarchical Energy Landscape

Spectral diffusion as a result of both the transitions between different molecular conformers and the ′′molecular softness′′ of quasi‐free perylene diimides on a SiO₂ surface is investigated by means of single‐molecule spectroscopy, which reveals the time dependence of both the fluorescence spectra and the three‐dimensional orientation. Spectral wavelengths of all single emitters cover a wide energy range of about 0.27 eV, which is due to different types of conformers with large differences in optical transition energy. Time‐dependent spectral trajectories of single emitters within this wavelength manifold are evaluated with a model transcribed from the analysis of spatial diffusion. Spectral diffusion processes are closely correlated with fluorescence emission and excitation power. The overall analysis of spectral diffusion reveals, similar to proteins, a hierarchy of energy barriers in a broad energy landscape.     

Molecular design for high-spin molecules in view of vibronic couplings

A high-spin ground state is possible if a molecule has degenerate or pseudo-degenerate frontier orbitals. Since strong vibronic couplings, or electron-vibration interactions give rise to reduce the degeneracy or pseudo degeneracy, a lower-spin state is the ground state in such a molecule. Therefore small vibronic couplings are desirable for designing molecules with a high-spin ground state. Vibronic coupling constants of derivatives of m-phenylene diamine are evaluated. The calculated results are analyzed based on vibronic coupling density which enables us to control the vibronic coupling constants. Based on the vibronic coupling density analysis, we succeed in recovering the high-spin ground state from the closed-shell singlet ground state of a methoxy derivative of m-phenylene diamine by introducing an appropriate substituent.     

Theoretical study on singlet oxygen adsorption onto surface of graphene-like aromatic hydrocarbon molecules

Recently, graphene sheet is one of interesting systems to realize novel electronic properties. Especially, interaction between graphene and adsorbed oxygen molecule is very important to control electronic condition. In this paper, we employed some aromatic hydrocarbons as simple systems of graphene sheet and ab initio MO calculations were carried out to investigate inter-molecular interaction. It is found that not triplet but singlet O₂ molecule have potential of chemisorption onto graphene surface. From the calculated potential energy surface (PES) for distance between benzene and O₂ molecules, meta-stable structure is found at about 1.5 Å with potential barrier. In the optimized structure of its meta-stable state, structural strain can be relaxed through bending of planer benzene ring. Its energy is estimated at 70.10 kcal/mol for benzene. We also estimated the strain effects for naphthalene and pyrene molecules as larger case of graphene and they were 80.85 and 72.45 kcal/mol, respectively.     

Single-Molecule Magnetism in Dy2 Cluster Based on a Schiff Base Ligand

Two dinuclear Ln^III-based clusters, namely [Dy₂L₂(NO₃)₂(DME)₄] ( 1 ) and [Gd₂L₂(NO₃)₂(DME)₄] ( 2 ) [H₂L = (E)-2-((2-hydroxybenzylidene)amino)phenol] were obtained under hydrothermal condition. Two Ln^III ions are bridged by two phenolic hydroxyl oxygen atoms, and the distances of them are 3.829 Å (Dy1–Dy1A) and 3.860 Å (Gd1–Gd1A). Two Dy1–O–Dy1A and Gd1–O–Gd1A angles are 109.4° and 109.8°, respectively. Magnetic studies reveal a weak antiferromagnetic interaction between Gd ions in complex 2 , and single-molecule magnet behavior for 1 with U_eff = 49.9 K and τ₀ = 1.54 × 10^–6 s.     

采用新型分子表面印迹技术构建手性空穴实现对手性药物对映体的分子识别与高效拆分

通过偶联剂γ-氨丙基三甲氧基硅烷（AMPS）的媒介,通过表面引发接枝,将功能单体甲基丙烯酸（MAA）接枝聚合在微米级硅胶微粒表面,制得功能接枝微粒PMAA/SiO2;采用本课题组建立的新型分子表面印迹技术,以四咪唑（TM）为模型手性药物,用其左旋对映体L-TM为模板分子,乙二醇二缩水甘油醚（EGDE）为交联剂,对接枝在...